diff --git a/startup/alias.template b/startup/alias.template
new file mode 100644
index 0000000000000000000000000000000000000000..c3a40f10ad00a82de30eac678a0f565eb09949f5
--- /dev/null
+++ b/startup/alias.template
@@ -0,0 +1 @@
+alias($(O), $(A))
diff --git a/startup/configChannels.sh b/startup/configChannels.sh
new file mode 100644
index 0000000000000000000000000000000000000000..31921180bc7dce9e625bba6e19ae9b707e83b3d9
--- /dev/null
+++ b/startup/configChannels.sh
@@ -0,0 +1,40 @@
+function usage() {
+    echo "usage: configChannels.sh"
+    echo "-a    channel number - amplifier power"
+    echo "-c    channel number - cavity power"
+    echo "-n    digitiser instance - as integer starting from 1"
+    echo "-p    channel number - preamplifier power"
+    echo "-h    help"
+}
+
+options=":a:c:n:p:h"
+while getopts "${options}" opts; do
+    case "${opts}" in
+        h) usage                    ;;
+        a) chAmp=${OPTARG}          ;;
+        c) chCav=${OPTARG}          ;;
+        n) iNum=${OPTARG}           ;; 
+        p) chPreAmp=${OPTARG}       ;;
+    esac
+done
+
+if [ $# -lt 3 ]; then
+    echo "Script requires at least input of digitiser instance and a channel number"
+    usage
+fi
+
+installPath=/iocs/sis8300llrf
+fPath=$installPath/config-aliasing$iNum.iocsh
+# Populate IOC snippet for alias values
+if [ -f $fPath ]; then
+    rm $fPath
+fi
+
+# Populate iocsh snippet containing alias definitions.
+echo "# Alias definitions for digitiser card number $iNum" > $fPath
+template0="dbLoadRecords(\$(E3_CMD_TOP)/alias.template, \"O=$LLRF_IOC_NAME$iNum:AI"
+if [ ${#chAmp} -gt 0 ]; then
+    echo "$template0$chAmp, A=$LLRF_IOC_NAME:AmpPow\")" >> $fPath
+    echo "$template0$chAmp-ATT, A=$LLRF_IOC_NAME:AmpPow-ATT\")" >> $fPath
+    echo "$template0$chAmp-ATT-RBV, A=$LLRF_IOC_NAME:AmpPow-ATT-RBV\")" >> $fPath
+fi
diff --git a/startup/deployServiceIOC.sh b/startup/deployServiceIOC.sh
index a0651f6d14a2eef358d02529afeaa747964e8618..c94524eabfb95b0792e4ec4e8331413919afca15 100755
--- a/startup/deployServiceIOC.sh
+++ b/startup/deployServiceIOC.sh
@@ -6,9 +6,12 @@ fi
 
 if [[ $# -gt 0 ]] ; then
   EPICS_SRC=$1
+  EPICS_BASE=$2
+  E3_REQUIRE_VERSION=$3
+  LLRF_IOC_NAME=$4
 else
   echo "Usage: sudo deployServiceIOC.sh <e3 source directory> <epics base directory> <epics require version> <LLRF_IOC_NAME>"
-  echo "sudo deployServiceIOC.sh $EPICS_SRC $EPICS_BASE $E3_REQUIRE_VERSION"
+  echo "sudo deployServiceIOC.sh $EPICS_SRC $EPICS_BASE $E3_REQUIRE_VERSION $LLRF_IOC_NAME"
   exit
 fi
 
@@ -18,10 +21,10 @@ serviceNameGit=$EPICS_SRC/e3-sis8300llrf/startup/ioc@llrf.service
 #Prepare service and enable
 
 #Get EPICS base version and require version
-ver_base=$(echo $2 | cut -c13-18)
+ver_base=$(echo $EPICS_BASE | cut -c13-18)
 eval "sed -e 's/icslab-llrf/$hostName/'\
 	-e 's/<epics_base>/$ver_base/'\
-	-e 's/<req_version>/$3/'\
+	-e 's/<req_version>/$E3_REQUIRE_VERSION/'\
 	< $serviceNameGit" > $serviceName
 
 systemctl enable ioc@llrf.service
@@ -29,54 +32,17 @@ systemctl enable ioc@llrf.service
 
 #Prepare siteApp configuration for IOC instance specific configuration
 siteApp=/iocs/sis8300llrf
-mkdir -p $siteApp/log/
-mkdir -p $siteApp/run/
-
-cp $EPICS_SRC/e3-sis8300llrf/startup/llrf_template.iocsh $siteApp/llrf.iocsh
-
-slots_fpga=$(ls /dev/sis8300-* | cut -f2 -d "-")
-if [ ${#slots_fpga} -lt 1 ] ; then 
-  echo "Could not find SIS8300 digitiser board."
-  echo "Board slot must be manually configured in $siteApp/llrf.cmd"
-  snippet="epicsEnvSet(\"LLRF_PREFIX\"     \"$4\" ) \\\n \
-epicsEnvSet(\"LLRF_SLOT\"       \"<slot>\"    ) \\\n \
-iocshLoad $\(E3_CMD_TOP\)\/llrf.iocsh \\\n "
-  eval "sed -e $'s/<snippet>/$snippet/g' < $EPICS_SRC/e3-sis8300llrf/startup/llrf_template.cmd  > $siteApp/llrf.cmd" 
-else
-  if [ ${#slots_fpga} -eq 1 ]; then
-     i='' # just one board, use original IOC name
-  else
-     i=1 # more than 1 board, enumerate IOC name
-  fi
-
-  snippet=""
-  for slot_fpga in $(ls /dev/sis8300-* | cut -f2 -d "-" | sort -n)
-  do
-    snippet="$snippet \\\n\
-epicsEnvSet(\"LLRF_PREFIX\"     \"$4$i\" ) \\\n \
-epicsEnvSet(\"LLRF_SLOT\"       \"$slot_fpga\"    ) \\\n \
-iocshLoad $\(E3_CMD_TOP\)\/llrf.iocsh \\\n "
-    i=$(($i+1))
-  done
-    #Populate digitiser slot and IOC Name in startup script.
-    eval "sed -e $'s/<snippet>/$snippet/g' < $EPICS_SRC/e3-sis8300llrf/startup/llrf_template.cmd  > $siteApp/llrf.cmd" 
-
+if [ ! -d $siteApp/log ]; then
+  mkdir -p "$siteApp/log/"
 fi
-
-
-#Timing configuration
-# We check the EVR is available on PCIe to use in timing.iocsh snippet used to configure the EVR.
-pcie_enumeration=$(lspci | grep Xilinx | cut -c1-7)
-if [ ${#pcie_enumeration} != 7 ] ; then
-  echo "Could not find Timing Event Receiver on PCIexpress bus."
-  echo "Therefore no timing configuration created."
-  echo "# no timing configuration as no EVR detected on PCIe bus." > $siteApp/timing.iocsh 
-else
-  eval "sed -e 's/<B:D.F>/$pcie_enumeration/' -e 's/<LLRF_IOC_NAME>/$4/' < $EPICS_SRC/e3-sis8300llrf/startup/timing_template.iocsh" > "/iocs/sis8300llrf/timing.iocsh"
-  cp $EPICS_SRC/e3-sis8300llrf/startup/tr-sequencer.sh $siteApp/tr-sequencer.sh
+if [ ! -d $siteApp/run ]; then
+  mkdir -p "$siteApp/run/"
 fi
 
+chown -R iocuser $siteApp
+
 if [ ! -L /etc/systemd/system/multi-user.target.wants/ioc@llrf.service ] ; then
   echo "ioc@llrf.service is not enabled."
 fi
 systemctl daemon-reload
+
diff --git a/startup/deployStartup.sh b/startup/deployStartup.sh
new file mode 100755
index 0000000000000000000000000000000000000000..e122e050ab6aff5fa03f4fa45a7bc630cd6b9ab7
--- /dev/null
+++ b/startup/deployStartup.sh
@@ -0,0 +1,58 @@
+#!/bin/sh
+
+#Prepare siteApp configuration for IOC instance specific configuration
+siteApp=/iocs/sis8300llrf
+
+if [ ! -d $siteApp ]; then
+  sudo mkdir -p "$siteApp"
+fi
+
+sudo chown -R iocuser "$siteApp"
+
+
+cp $EPICS_SRC/e3-sis8300llrf/startup/llrf_template.iocsh $siteApp/llrf.iocsh
+slots_fpga=$(ls /dev/sis8300-* | cut -f2 -d "-")
+if [ ${#slots_fpga} -lt 1 ] ; then 
+  echo "Could not find SIS8300 digitiser board."
+  echo "Board slot must be manually configured in $siteApp/llrf.cmd"
+  snippet="epicsEnvSet(\"LLRF_PREFIX\"     \"$LLRF_IOC_NAME\" ) \\\n \
+epicsEnvSet(\"LLRF_SLOT\"       \"<slot>\"    ) \\\n \
+iocshLoad $\(E3_CMD_TOP\)\/llrf.iocsh \\\n \
+iocshLoad $\(E3_CMD_TOP\)\/config-aliasing1.iocsh \\\n"
+  echo "snippet = $snippet"
+  eval "sed -e $'s/<snippet>/$snippet/g' < $EPICS_SRC/e3-sis8300llrf/startup/llrf_template.cmd  > $siteApp/llrf.cmd" 
+else
+  # Start board enumeration from 1.
+  i=1
+
+  snippet=""
+  for slot_fpga in $(ls /dev/sis8300-* | cut -f2 -d "-" | sort -n)
+  do
+    snippet="$snippet \\\n\
+epicsEnvSet(\"LLRF_PREFIX\"     \"$LLRF_IOC_NAME$i\" ) \\\n \
+epicsEnvSet(\"LLRF_SLOT\"       \"$slot_fpga\"    ) \\\n \
+iocshLoad $\(E3_CMD_TOP\)\/llrf.iocsh \\\n \
+iocshLoad $\(E3_CMD_TOP\)\/config-aliasing$i.iocsh \\\n"
+    i=$(($i+1))
+  done
+    #Populate digitiser slot and IOC Name in startup script.
+    eval "sed -e $'s/<snippet>/$snippet/g'\
+        < $EPICS_SRC/e3-sis8300llrf/startup/llrf_template.cmd  > $siteApp/llrf.cmd" 
+
+fi
+
+
+#Timing configuration
+# We check the EVR is available on PCIe to use in timing.iocsh snippet used to configure the EVR.
+pcie_enumeration=$(lspci | grep Xilinx | cut -c1-7)
+if [ ${#pcie_enumeration} != 7 ] ; then
+  echo "Could not find Timing Event Receiver on PCIexpress bus."
+  echo "Therefore no timing configuration created."
+  echo "# no timing configuration as no EVR detected on PCIe bus." > $siteApp/timing.iocsh 
+else
+  eval "sed -e 's/<B:D.F>/$pcie_enumeration/' -e 's/<LLRF_IOC_NAME>/$LLRF_IOC_NAME/' < $EPICS_SRC/e3-sis8300llrf/startup/timing_template.iocsh" > "/iocs/sis8300llrf/timing.iocsh"
+  cp $EPICS_SRC/e3-sis8300llrf/startup/tr-sequencer.sh $siteApp/tr-sequencer.sh
+fi
+
+# Alias template
+cp $EPICS_SRC/e3-sis8300llrf/startup/alias.template $siteApp/alias.template
diff --git a/startup/llrf_template.cmd b/startup/llrf_template.cmd
index 097fdfeafe342f4ad1615fca7f6864edc5bedf1c..b4f21011bf81986199344d0522ae39fca6795204 100644
--- a/startup/llrf_template.cmd
+++ b/startup/llrf_template.cmd
@@ -3,7 +3,7 @@ iocshLoad $(E3_CMD_TOP)/timing.iocsh
 
 epicsEnvSet("EPICS_CA_MAX_ARRAY_BYTES" "8388624")
 require sis8300llrf, 3.10.3
-ndsSetTraceLevel 5
+ndsSetTraceLevel 3
 
 <snippet>
 
diff --git a/startup/llrf_template.iocsh b/startup/llrf_template.iocsh
index 77c580a74fa5a2e7c002ae22bc8506d61565e013..0870e3508e9a8f6e06e5cf958f99b938c2bce4a0 100644
--- a/startup/llrf_template.iocsh
+++ b/startup/llrf_template.iocsh
@@ -23,7 +23,6 @@ dbLoadRecords("sis8300Register.db", "PREFIX=$(LLRF_PREFIX), ASYN_PORT=$(LLRF_POR
 dbLoadRecords("sis8300noAO.db", "PREFIX=$(LLRF_PREFIX), ASYN_PORT=$(LLRF_PORT), AI_NELM=$(AI_SMNM_MAX)")
 dbLoadRecords("sis8300llrf-Register.db", "PREFIX=$(LLRF_PREFIX), ASYN_PORT=$(LLRF_PORT), REG_SCAN=2")
 
-
 epicsThreadSleep(1)
 # Configure the RTM for LLRF
 afterInit("dbpf $(LLRF_PREFIX):RTM 2 > /dev/null")
diff --git a/startup/setPVs.sh b/startup/setPVs.sh
new file mode 100644
index 0000000000000000000000000000000000000000..b27dd27d4669b3248efe0da28284e9682a8821d0
--- /dev/null
+++ b/startup/setPVs.sh
@@ -0,0 +1,10 @@
+#!/bin/bash
+caput -s ${LLRF_IOC_NAME}:AI0-MAG.DESC "PreAmp Fwd"
+caput -s ${LLRF_IOC_NAME}:AI1-MAG.DESC "PwrAmp Fwd"
+caput -s ${LLRF_IOC_NAME}:AI2-SMON-MAGCURR.DESC "PwrAmp Rflct"
+caput -s ${LLRF_IOC_NAME}:AI3-SMON-MAGCURR.DESC "Circ Fwd"
+caput -s ${LLRF_IOC_NAME}:AI4-SMON-MAGCURR.DESC "Cav1 Fwd"
+caput -s ${LLRF_IOC_NAME}:AI5-SMON-MAGCURR.DESC "Cav1 Reflct"
+caput -s ${LLRF_IOC_NAME}:AI6-SMON-MAGCURR.DESC "Cav2 Fwd"
+caput -s ${LLRF_IOC_NAME}:AI7-SMON-MAGCURR.DESC "Cav2 Reflct"
+
diff --git a/testing/test1.sh b/testing/test1.sh
index f5ede7606e5a973de7e7e81cb7920b159315dfee..d4c87380dd200b8324e439e6d154a9c50fb9163a 100755
--- a/testing/test1.sh
+++ b/testing/test1.sh
@@ -82,7 +82,7 @@ echo 'Simulating backplane triggers to FPGA for pulse_coming, pulse_start and pu
 
 for i in `seq 1 50`
 do
-    echo "RF Pulse $i"
+    echo "Beam Pulse $i"
     sis8300drv_reg /dev/sis8300-$slot 0x404 -w 0x20
     sis8300drv_reg /dev/sis8300-$slot 0x404 -w 0x40
     sis8300drv_reg /dev/sis8300-$slot 0x404 -w 0x80