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Simplify data gather

Afonso Mukai requested to merge simplify_data_gather into master

Created by: dominikwerder

Description of work

Reduce duplication of code: To prepare writing to HDF, we often have to gather n-dimensional json arrays into a buffer suitable for the call to h5cpp. Previously, we had some code duplication for the cases of numerical and string data. This is now unified.

Acceptance Criteria

Tests should pass as before.

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