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Fix dir permission in system test

Afonso Mukai requested to merge fix_dir_permission_in_system_test into development

Created by: amues

Issue

n/a

Description of work

Fix the permission issue causing the system tests to fail, where the new VM user doesn't match the Docker container user and the file writer cannot write to the host directories mounted inside the container.

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Reminder

Changes should be documented in changes.md

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